From raw omics data to published discovery.
Custom genomics and transcriptomics analyses for model and non-model organisms, animals and microbes alike. We design the pipeline, run the analysis, and stay with you through peer review.
Not just analyses. Support from the first FASTQ to the final figure.
Standard tools are not always sufficient for cutting-edge research. We bridge that gap with workflows tailored to your data, and with the academic support that gets the work published.
Custom pipelines
Containerized Nextflow workflows built for your organism and your question, delivered to your lab so you can run them again.
- Genome and transcriptome assembly
- Long-read and short-read data
- Reproducible, documented, yours to keep
Standard analyses
Differential expression, variant calling, annotation and comparative genomics with established pipelines, at the lower hourly tier.
- RNA-seq, WGS, WES
- Microbial and eukaryotic genomes
- Reports ready for the methods section
Academic support
Grant writing, manuscript development and technical advice, with guaranteed support during revisions so your work passes peer review.
- Methods and figures for submission
- Reviewer responses
- Training for your students
Collaborative from the first call.
Free consultation
Tell us about your data and the question. We reply within 48 hours and set up a call.
Roadmap and quote
A written plan with timelines, deliverables and the hourly tier that applies.
Analysis and pipeline
We run the analyses and build the workflow, with regular check-ins and interim results.
Publication support
Methods, figures, revisions and training, so the pipeline keeps working after we leave.
Tools we have built and keep improving.
Pedigree Aligner
Identifies and paints recombinant regions across the chromosomes of haploid genomes, for pedigree and crossing experiments.
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RNA Sign
A scalable Nextflow pipeline that combines CNNs and ensemble machine learning to identify non-coding RNAs across genomes using only RNA-seq data.
Recent projects.
Transposon evolution in fungi
A custom pipeline to identify expressed transposons from long reads, map their insertions and track their evolution through phylogenetic analyses.
Cancer biomarker discovery
Analysis of a 10-year longitudinal study of cancer progression to identify new RNA markers, combining standard differential expression with custom comparisons across tissue types.
Automatic miRNA classification
Machine-learning classification of microRNAs directly from RNA-seq data, built on the RNA Sign pipeline, to annotate small RNAs in organisms without a reference catalogue.
Transparent hourly tiers. No surprises at invoice time.
The tier depends on the complexity of the work, and every project includes up to 20 hours of complimentary consultation.
Fundamental data analysis with established pipelines, and written reports.
Containerized Nextflow pipelines, custom workflows and specialised model training.
General consultation in 2 h units at 30 €/h. Pipeline or transcriptomics training in 10 h units at 50 €/h.
Prices exclude VAT where applicable. Invoiced in euros from Italy (P.IVA 18361021001).
Questions researchers ask before the first call.
My research focuses on a very specific or non-model organism. Is that a problem?
No. Non-model organisms are our usual case. We adapt or build the pipeline for your genome rather than forcing your data through tools made for human or mouse.
What if I only need a standard analysis rather than a custom pipeline?
Standard analyses are billed at the lower tier. You still get the free consultation and a report written for your methods section.
Do we get to keep the tools you develop?
Yes. We deliver the complete pipeline to your laboratory and train your students to run and maintain it. You do not have to come back to us for every run.
How quickly do you reply?
Within 48 hours, Monday to Friday. We work with groups across Europe and Asia, so time zones are rarely a problem.
Tell us about your data.
Send a few lines about the project and the question behind it. We reply within 48 hours with a first assessment and a proposal for the free consultation.